| Name | Version | Summary | date |
| pyhmmer |
0.10.12 |
Cython bindings and Python interface to HMMER3. |
2024-04-25 17:30:59 |
| pronto |
2.5.7 |
Python frontend to ontologies. |
2024-04-24 13:39:46 |
| pyjess |
0.1.1 |
Cython bindings and Python interface to JESS, a 3D template matching software. |
2024-04-18 16:24:13 |
| gb-io |
0.3.3 |
A Python interface to gb-io, a fast GenBank parser and serializer written in Rust. |
2024-04-13 23:02:36 |
| nafcodec |
0.2.0 |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. |
2024-04-10 09:49:14 |
| pyswrd |
0.1.1 |
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search. |
2024-02-28 01:50:20 |
| pyopal |
0.5.2 |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner. |
2024-02-28 00:29:46 |
| gecco-tool |
0.9.10 |
Gene cluster prediction with Conditional random fields. |
2024-02-27 16:10:51 |
| torch-treecrf |
0.2.0 |
A PyTorch implementation of Tree-structured Conditional Random Fields. |
2024-02-16 12:37:02 |
| pyfamsa |
0.3.2 |
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments. |
2024-01-27 14:10:09 |
| pyrodigal |
3.2.2 |
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. |
2024-01-21 01:44:46 |
| lightmotif |
0.6.0 |
PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices. |
2023-12-13 16:35:20 |
| fastobo |
0.12.3 |
Faultless AST for Open Biomedical Ontologies in Python. |
2023-12-06 12:34:30 |
| pyrodigal-gv |
0.3.0 |
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code. |
2023-11-27 15:28:42 |
| nmrml2isa |
0.3.3 |
nmrml2isa - nmrML to ISA-Tab parsing tool |
2023-11-06 16:00:57 |
| fs.sshfs |
1.0.2 |
Pyfilesystem2 over SSH using paramiko |
2023-08-17 09:45:45 |
| pytrimal |
0.7.0 |
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. |
2023-07-21 19:17:59 |
| pyhmmer-arm |
0.7.5 |
Cython bindings and Python interface to HMMER3. |
2023-04-19 00:34:24 |
| peptides |
0.3.2 |
Physicochemical properties, indices and descriptors for amino-acid sequences. |
2023-04-12 18:38:18 |
| pymemesuite |
0.1.0a2 |
Cython bindings and Python interface to the MEME suite. |
2023-04-04 13:45:04 |
Martin Larralde